Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1951563..1951834 | Replicon | chromosome |
| Accession | NZ_CP059003 | ||
| Organism | Escherichia coli strain 2D | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1951694..1951796 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1951563..1951834 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0E72_RS09340 | 1948118..1948780 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H0E72_RS09345 | 1948804..1949460 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| H0E72_RS09350 | 1949562..1949792 | - | 231 | WP_024176156.1 | DNA polymerase III subunit theta | - |
| H0E72_RS09355 | 1949931..1950305 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| H0E72_RS09360 | 1950309..1951181 | + | 873 | WP_000879322.1 | copper homeostasis membrane protein CopD | - |
| H0E72_RS09365 | 1951194..1951535 | + | 342 | WP_000976474.1 | YebY family protein | - |
| - | 1951563..1951834 | - | 272 | - | - | Antitoxin |
| - | 1951694..1951796 | + | 103 | - | - | Toxin |
| H0E72_RS09370 | 1951931..1952587 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| H0E72_RS09375 | 1952588..1952779 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H0E72_RS09380 | 1952884..1953120 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H0E72_RS09385 | 1953238..1954677 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168080 NZ_CP059003:1951694-1951796 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT168080 NZ_CP059003:c1951834-1951563 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
