Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1984908..1985053 | Replicon | chromosome |
| Accession | NZ_CP058960 | ||
| Organism | Klebsiella pneumoniae strain ZZW20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1984944..1985046 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1984908..1985053 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0E90_RS09820 | 1980038..1982098 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| H0E90_RS09825 | 1982102..1982761 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H0E90_RS09830 | 1982840..1983070 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H0E90_RS09835 | 1983183..1983557 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| H0E90_RS09840 | 1983561..1984430 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| H0E90_RS09845 | 1984447..1984785 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1984908..1985053 | - | 146 | - | - | Antitoxin |
| - | 1984944..1985046 | + | 103 | - | - | Toxin |
| H0E90_RS09850 | 1985422..1985565 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| H0E90_RS09855 | 1985670..1986638 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| H0E90_RS09860 | 1986795..1987448 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| H0E90_RS09865 | 1987445..1987636 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H0E90_RS09870 | 1987734..1987973 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H0E90_RS09875 | 1988089..1989522 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T168044 NZ_CP058960:1984944-1985046 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT168044 NZ_CP058960:c1985053-1984908 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
