Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4213265..4213762 Replicon chromosome
Accession NZ_CP058948
Organism Escherichia coli strain SY3626C5

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag HZ988_RS20475 Protein ID WP_001173343.1
Coordinates 4213265..4213438 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag HZ988_RS20480 Protein ID WP_000398619.1
Coordinates 4213466..4213762 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HZ988_RS20465 4209935..4211392 + 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -
HZ988_RS20470 4211629..4213146 + 1518 WP_001295074.1 lysine--tRNA ligase -
HZ988_RS20475 4213265..4213438 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
HZ988_RS20480 4213466..4213762 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
HZ988_RS20485 4213989..4214261 - 273 WP_000405651.1 N-acetyltransferase -
HZ988_RS20490 4214273..4214503 - 231 WP_000371704.1 (4Fe-4S)-binding protein -
HZ988_RS20495 4214684..4216315 + 1632 WP_001216477.1 sensor histidine kinase -
HZ988_RS20500 4216312..4217031 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T168022 WP_001173343.1 NZ_CP058948:c4213438-4213265 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T168022 NZ_CP075566:c6403203-6402901 [Pseudomonas fluorescens]
ATGATCGACTTCGAACGATCCAGCGCATTTGCCGATTGGCTCGACTCAATGAGAGACACCATTGGAAAAGCCCGGATCAT
CGCCAGACTCCGAGCTGCCGAACATGGAAATTTTGGTGATTGCGAACCTGTAGGCGAATCTGTCTATGAAATGCGTGTTC
ATCATGGTCCGGGCTACAGGATGTACTTCACTCGCCGAGGCGAAGTGGTTTACCTGCTTCTGGTGGGGGGCGACAAGTCG
ACTCAAAAACGCGATATCAAACGCGCTATTCAAATGGCGCAAAACATCGGTAATGAGGAGTAG

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT168022 WP_000398619.1 NZ_CP058948:c4213762-4213466 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp

>AT168022 NZ_CP075566:c6402897-6402607 [Pseudomonas fluorescens]
ATGGCCGAGCAATTCACCCGTTTCGATGCCGCCGAATTTCTCAAATCGCCAGAAGAAATGGCGGCTTATCTGGATGCATG
CTTTGAAGAAGATGCCGGCGATGGAGTACTGATACGCGCGGCACTCAACGATATAGCCAGAGCACAGGGCATGACACAGG
TTGCACGTGATGCCGGCCTTGGTCGTGAAAGCTTGTACAAAGCATTGAGCAGCACTGGCAATCCGGAATTCGCGACTATC
ATGAAGGTTATGAAAGCCTTGGGTCTGCGTCTGCACGCCACTGCGATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References