Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3726281..3726426 | Replicon | chromosome |
| Accession | NZ_CP058940 | ||
| Organism | Klebsiella pneumoniae strain BA39649 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3726317..3726419 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3726281..3726426 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBJ39_RS18150 | 3721411..3723471 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HBJ39_RS18155 | 3723475..3724134 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HBJ39_RS18160 | 3724213..3724443 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HBJ39_RS18165 | 3724556..3724930 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HBJ39_RS18170 | 3724934..3725803 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| HBJ39_RS18175 | 3725820..3726158 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 3726281..3726426 | - | 146 | - | - | Antitoxin |
| - | 3726317..3726419 | + | 103 | - | - | Toxin |
| HBJ39_RS18180 | 3726795..3726938 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HBJ39_RS18185 | 3727043..3728018 | - | 976 | Protein_3527 | VirK/YbjX family protein | - |
| HBJ39_RS18190 | 3728175..3728828 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| HBJ39_RS18195 | 3728825..3729016 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HBJ39_RS18200 | 3729114..3729353 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HBJ39_RS18205 | 3729469..3730902 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167968 NZ_CP058940:3726317-3726419 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT167968 NZ_CP058940:c3726426-3726281 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
