Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2120456..2120724 | Replicon | chromosome |
| Accession | NZ_CP058874 | ||
| Organism | Escherichia coli strain STLEFF_47 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2120584..2120686 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2120456..2120724 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT32_RS10095 | 2117009..2117671 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HZT32_RS10100 | 2117695..2118351 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZT32_RS10105 | 2118453..2118683 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| HZT32_RS10110 | 2118822..2119196 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HZT32_RS10115 | 2119200..2120072 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| HZT32_RS10120 | 2120085..2120426 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2120456..2120724 | - | 269 | - | - | Antitoxin |
| - | 2120584..2120686 | + | 103 | - | - | Toxin |
| HZT32_RS10125 | 2120821..2121477 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| HZT32_RS10130 | 2121478..2121669 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HZT32_RS10135 | 2121774..2122010 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HZT32_RS10140 | 2122128..2123567 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167852 NZ_CP058874:2120584-2120686 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT167852 NZ_CP058874:c2120724-2120456 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
