Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1939576..1939721 | Replicon | chromosome |
| Accession | NZ_CP058869 | ||
| Organism | Klebsiella pneumoniae strain STLEFF_44 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1939612..1939714 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1939576..1939721 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT31_RS09530 | 1934706..1936766 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HZT31_RS09535 | 1936770..1937429 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HZT31_RS09540 | 1937508..1937738 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HZT31_RS09545 | 1937851..1938225 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HZT31_RS09550 | 1938229..1939098 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| HZT31_RS09555 | 1939115..1939453 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1939576..1939721 | - | 146 | - | - | Antitoxin |
| - | 1939612..1939714 | + | 103 | - | - | Toxin |
| HZT31_RS09560 | 1940090..1940233 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HZT31_RS09565 | 1940338..1941306 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HZT31_RS09570 | 1941463..1942116 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| HZT31_RS09575 | 1942113..1942304 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HZT31_RS09580 | 1942402..1942641 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HZT31_RS09585 | 1942757..1944190 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167822 NZ_CP058869:1939612-1939714 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT167822 NZ_CP058869:c1939721-1939576 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
