Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1871676..1871821 | Replicon | chromosome |
| Accession | NZ_CP058866 | ||
| Organism | Klebsiella pneumoniae strain STLEFF_42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1871712..1871814 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1871676..1871821 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT30_RS09010 | 1866806..1868866 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HZT30_RS09015 | 1868870..1869529 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| HZT30_RS09020 | 1869608..1869838 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HZT30_RS09025 | 1869951..1870325 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HZT30_RS09030 | 1870329..1871198 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HZT30_RS09035 | 1871215..1871553 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1871676..1871821 | - | 146 | - | - | Antitoxin |
| - | 1871712..1871814 | + | 103 | - | - | Toxin |
| HZT30_RS09040 | 1872190..1872333 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HZT30_RS09045 | 1872438..1873406 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HZT30_RS09050 | 1873563..1874216 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HZT30_RS09055 | 1874213..1874404 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HZT30_RS09060 | 1874502..1874741 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HZT30_RS09065 | 1874857..1876290 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167802 NZ_CP058866:1871712-1871814 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT167802 NZ_CP058866:c1871821-1871676 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
