Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1819983..1820130 | Replicon | chromosome |
| Accession | NZ_CP058859 | ||
| Organism | Klebsiella quasipneumoniae strain STLEFF_28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1820024..1820126 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1819983..1820130 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT23_RS08785 | 1815118..1817178 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| HZT23_RS08790 | 1817182..1817841 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| HZT23_RS08795 | 1817920..1818150 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HZT23_RS08800 | 1818263..1818637 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| HZT23_RS08805 | 1818641..1819510 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| HZT23_RS08810 | 1819527..1819865 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1819983..1820130 | - | 148 | - | - | Antitoxin |
| - | 1820024..1820126 | + | 103 | - | - | Toxin |
| HZT23_RS08815 | 1820514..1820657 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| HZT23_RS08820 | 1820761..1821729 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| HZT23_RS08825 | 1821886..1822539 | + | 654 | WP_099441356.1 | protein-serine/threonine phosphatase | - |
| HZT23_RS08830 | 1822536..1822727 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HZT23_RS08835 | 1822825..1823064 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HZT23_RS08840 | 1823181..1824614 | - | 1434 | WP_032456308.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167782 NZ_CP058859:1820024-1820126 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT167782 NZ_CP058859:c1820130-1819983 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
