Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 998078..998349 | Replicon | chromosome |
| Accession | NZ_CP058839 | ||
| Organism | Shigella flexneri strain STLEFF_34 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 998116..998219 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 998078..998349 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT26_RS04990 | 995235..996674 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HZT26_RS04995 | 996792..997028 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HZT26_RS05000 | 997133..997324 | + | 192 | WP_000457842.1 | YebW family protein | - |
| HZT26_RS05005 | 997325..997981 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 998078..998349 | + | 272 | - | - | Antitoxin |
| - | 998116..998219 | - | 104 | - | - | Toxin |
| HZT26_RS05010 | 998377..998718 | - | 342 | WP_000976476.1 | YebY family protein | - |
| HZT26_RS05015 | 998731..999603 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HZT26_RS05020 | 999607..999981 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HZT26_RS05025 | 1000120..1000350 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZT26_RS05030 | 1000452..1001108 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZT26_RS05035 | 1001132..1001794 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167653 NZ_CP058839:c998219-998116 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167653 NZ_CP058839:998078-998349 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
