Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2202740..2203266 | Replicon | chromosome |
| Accession | NZ_CP058831 | ||
| Organism | Shigella flexneri strain STLE4 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | HZT21_RS10645 | Protein ID | WP_000323025.1 |
| Coordinates | 2202979..2203266 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | HZT21_RS10640 | Protein ID | WP_000534858.1 |
| Coordinates | 2202740..2202979 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT21_RS10610 (2197928) | 2197928..2198050 | - | 123 | Protein_2080 | transposase | - |
| HZT21_RS10620 (2199204) | 2199204..2199490 | + | 287 | Protein_2082 | hypothetical protein | - |
| HZT21_RS10625 (2200125) | 2200125..2201438 | + | 1314 | WP_000589005.1 | ISNCY family transposase | - |
| HZT21_RS10630 (2201875) | 2201875..2202207 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| HZT21_RS10635 (2202410) | 2202410..2202715 | - | 306 | WP_001326990.1 | protein YdfV | - |
| HZT21_RS10640 (2202740) | 2202740..2202979 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| HZT21_RS10645 (2202979) | 2202979..2203266 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| HZT21_RS10650 (2203338) | 2203338..2203493 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HZT21_RS10655 (2203710) | 2203710..2203961 | + | 252 | WP_000980994.1 | protein Rem | - |
| HZT21_RS10660 (2204028) | 2204028..2204306 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| HZT21_RS10665 (2204308) | 2204308..2205357 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| HZT21_RS10670 (2205371) | 2205371..2206123 | + | 753 | WP_001047135.1 | antitermination protein | - |
| HZT21_RS10675 (2206401) | 2206401..2206490 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| HZT21_RS10680 (2206545) | 2206545..2206757 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HZT21_RS10685 (2207058) | 2207058..2207273 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HZT21_RS10690 (2207637) | 2207637..2207807 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| HZT21_RS10695 (2208027) | 2208027..2208242 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2179424..2220241 | 40817 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T167614 WP_000323025.1 NZ_CP058831:2202979-2203266 [Shigella flexneri]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T167614 NZ_CP075191:3570115-3570414 [Ferribacterium limneticum]
ATGACCAAAACCGCTACCACCCGCTACGACGTTGCCGAGCACCTCAGAACCCAAGAGGAAATGGCCGCCTATCTTGAAGC
CTGCCTTGAAGAAGCAAACGGCGACGCGGCTTTTATCGCCAAGGCGCTGGGTGACATCGCTCGCGCCAAAGGCATGTCAC
AGGTCGCCCGAGATGCCGGGCTATCTCGCGAGAGTCTCTACAAGGCGCTTTCCGGCGACCGCAGCCCCGGCTTCGACACT
ATTCTCAAGGTCGTCGGAGCGCTGGGGCTGAAGCTGCATGCGCAGGCTAACCATGGGTGA
ATGACCAAAACCGCTACCACCCGCTACGACGTTGCCGAGCACCTCAGAACCCAAGAGGAAATGGCCGCCTATCTTGAAGC
CTGCCTTGAAGAAGCAAACGGCGACGCGGCTTTTATCGCCAAGGCGCTGGGTGACATCGCTCGCGCCAAAGGCATGTCAC
AGGTCGCCCGAGATGCCGGGCTATCTCGCGAGAGTCTCTACAAGGCGCTTTCCGGCGACCGCAGCCCCGGCTTCGACACT
ATTCTCAAGGTCGTCGGAGCGCTGGGGCTGAAGCTGCATGCGCAGGCTAACCATGGGTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT167614 WP_000534858.1 NZ_CP058831:2202740-2202979 [Shigella flexneri]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT167614 NZ_CP075191:3569813-3570118 [Ferribacterium limneticum]
ATGATTGAGATTCGCAAAACGGACGTCTTCGCTCAATGGCTTGATAGCCTGCGCGACATTCAGGCCCGGGCTCGCATTCA
GGTTCGGATCGAACGACTGGCCGCTGGCAATGCCGGTGATGCCGAGCCTGTCGGAGAAGGCGTGTCGGAGTTGCGAATCA
ACCATGGCCCCGGCTACCGGGTGTATTTCAAGAAGCGAGGGCAAGAGCTGATCATTCTGTTGGCCGGGGGAGACAAGAGC
ACCCAGGCCAAAGACATCAAAACAGCCCTGCGCCTCGCTCGTGATCTTTCGGAGCAAGCACCATGA
ATGATTGAGATTCGCAAAACGGACGTCTTCGCTCAATGGCTTGATAGCCTGCGCGACATTCAGGCCCGGGCTCGCATTCA
GGTTCGGATCGAACGACTGGCCGCTGGCAATGCCGGTGATGCCGAGCCTGTCGGAGAAGGCGTGTCGGAGTTGCGAATCA
ACCATGGCCCCGGCTACCGGGTGTATTTCAAGAAGCGAGGGCAAGAGCTGATCATTCTGTTGGCCGGGGGAGACAAGAGC
ACCCAGGCCAAAGACATCAAAACAGCCCTGCGCCTCGCTCGTGATCTTTCGGAGCAAGCACCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|