Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1997513..1997784 | Replicon | chromosome |
| Accession | NZ_CP058828 | ||
| Organism | Shigella flexneri strain STLE3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997643..1997746 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1997513..1997784 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT20_RS09440 | 1994068..1994730 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| HZT20_RS09445 | 1994754..1995410 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZT20_RS09450 | 1995512..1995742 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZT20_RS09455 | 1995881..1996255 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HZT20_RS09460 | 1996259..1997131 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HZT20_RS09465 | 1997144..1997485 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1997513..1997784 | - | 272 | - | - | Antitoxin |
| - | 1997643..1997746 | + | 104 | - | - | Toxin |
| HZT20_RS09470 | 1997881..1998537 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| HZT20_RS09475 | 1998538..1998729 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HZT20_RS09480 | 1998834..1999070 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HZT20_RS09485 | 1999188..2000627 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167584 NZ_CP058828:1997643-1997746 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167584 NZ_CP058828:c1997784-1997513 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
