Detailed information of TA system TA167553

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 24352..24977
• Replicon: plasmid pSRC27-F
• Accession: NZ_CP058809
• Organism: Salmonella enterica strain SRC27

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: HZY55_RS23655
• Protein ID: WP_000911322.1
• Coordinates: 24579..24977 (+)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: HZY55_RS23650
• Protein ID: WP_000450265.1
• Coordinates: 24352..24579 (+)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
HZY55_RS23650	24352..24579	+	228	WP_000450265.1	toxin-antitoxin system antitoxin VapB	Antitoxin
HZY55_RS23655	24579..24977	+	399	WP_000911322.1	tRNA(fMet)-specific endonuclease VapC	Toxin
HZY55_RS23660	24986..27148	-	2163	WP_000009318.1	type IV conjugative transfer system coupling protein TraD	-
HZY55_RS23665	27525..28256	-	732	WP_000782438.1	complement resistance protein TraT	-
HZY55_RS23670	28292..28786	-	495	WP_010999946.1	entry exclusion protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..93853	93853

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Haemolysin expression modulating, HHA (1-57)

Antitoxin

• Biofilm formation regulator YbaJ (1-117)

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 17065.17 Da
• Isoelectric Point: 12.9205

>T167553 WP_000911322.1 NZ_CP058809:24579-24977 [Salmonella enterica]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Nucleotide

• Length: 399 bp

>T167553 NZ_CP075169:c1481009-1480827 [Sodalis ligni]
ATGCGTCTACGCAAATGCAGAACCCTTGAGACATTGGAACGCGTGATTGAAAAGAACAAATACGAACTGTCCGACGATGA
GCTTGAGATATTCAACTCCGCAGCGGACCATCGCCTGGCTGAGCTGACGATGGATAAGCTCTATGATAAAGTTCCGGTAT
CTGTCTGGAAGTATGTTCGATAA

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 9759.25 Da
• Isoelectric Point: 12.6750

>AT167553 WP_000450265.1 NZ_CP058809:24352-24579 [Salmonella enterica]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Nucleotide

• Length: 228 bp

>AT167553 NZ_CP075169:c1481435-1481076 [Sodalis ligni]
ATGGACGAGTATTCACCCAAAAGACATGATATTGCGCAACTAAAATTCCTTTGTGCTACTCTTTATGATGAAGGCATTGC
AAGCCTCGGTGATAGTTACCATGGGTGGGTTAATGATCCCGCTTCCGCCATAAATCTGCAGATGAATGAATTAATTGATC
ATATTGCTTCTTATATGGTGAGCTTCAAGCTTAAATACCATAATGAAAGCGATCTCACCGATCATGTTGAATCTTTCCTG
GACGATACGTTTACGCTATTCAGCAGCAGCGGTATCAACAACTTGGATGTTCAGAGATGGCGTACCAGCCGCTCCCGCTT
ATTCGGAACATTCTCAGAGACTGAGCTTTGTATTTCTTGA