Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2057144..2057415 | Replicon | chromosome |
| Accession | NZ_CP058796 | ||
| Organism | Shigella flexneri strain STLIN_8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2057274..2057377 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2057144..2057415 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT12_RS10030 | 2053699..2054361 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HZT12_RS10035 | 2054385..2055041 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZT12_RS10040 | 2055143..2055373 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZT12_RS10045 | 2055512..2055886 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| HZT12_RS10050 | 2055890..2056762 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| HZT12_RS10055 | 2056775..2057116 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2057144..2057415 | - | 272 | - | - | Antitoxin |
| - | 2057274..2057377 | + | 104 | - | - | Toxin |
| HZT12_RS10060 | 2057512..2058168 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| HZT12_RS10065 | 2058169..2058360 | - | 192 | WP_001313035.1 | YebW family protein | - |
| HZT12_RS10070 | 2058465..2058701 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HZT12_RS10075 | 2058819..2060258 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167535 NZ_CP058796:2057274-2057377 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167535 NZ_CP058796:c2057415-2057144 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
