Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1985813..1986084 | Replicon | chromosome |
| Accession | NZ_CP058780 | ||
| Organism | Shigella flexneri strain STLIN_17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1985943..1986046 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1985813..1986084 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT03_RS09495 | 1982368..1983030 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HZT03_RS09500 | 1983054..1983710 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZT03_RS09505 | 1983812..1984042 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZT03_RS09510 | 1984181..1984555 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HZT03_RS09515 | 1984559..1985431 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HZT03_RS09520 | 1985444..1985785 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1985813..1986084 | - | 272 | - | - | Antitoxin |
| - | 1985943..1986046 | + | 104 | - | - | Toxin |
| HZT03_RS09525 | 1986181..1986837 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| HZT03_RS09530 | 1986838..1987029 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HZT03_RS09535 | 1987134..1987370 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HZT03_RS09540 | 1987488..1988927 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167449 NZ_CP058780:1985943-1986046 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167449 NZ_CP058780:c1986084-1985813 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
