Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1841072..1841217 | Replicon | chromosome |
| Accession | NZ_CP058758 | ||
| Organism | Klebsiella pneumoniae strain STLIN_3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1841108..1841210 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1841072..1841217 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT06_RS08985 (HZT06_08990) | 1836202..1838262 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HZT06_RS08990 (HZT06_08995) | 1838266..1838925 | - | 660 | WP_048980436.1 | exodeoxyribonuclease X | - |
| HZT06_RS08995 (HZT06_09000) | 1839004..1839234 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HZT06_RS09000 (HZT06_09005) | 1839347..1839721 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HZT06_RS09005 (HZT06_09010) | 1839725..1840594 | + | 870 | WP_048980438.1 | copper homeostasis membrane protein CopD | - |
| HZT06_RS09010 (HZT06_09015) | 1840611..1840949 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1841072..1841217 | - | 146 | - | - | Antitoxin |
| - | 1841108..1841210 | + | 103 | - | - | Toxin |
| HZT06_RS09015 (HZT06_09020) | 1841586..1841729 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HZT06_RS09020 (HZT06_09025) | 1841834..1842802 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HZT06_RS09025 (HZT06_09030) | 1842959..1843612 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| HZT06_RS09030 (HZT06_09035) | 1843609..1843800 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HZT06_RS09035 (HZT06_09040) | 1843898..1844137 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HZT06_RS09040 (HZT06_09045) | 1844253..1845686 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167392 NZ_CP058758:1841108-1841210 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT167392 NZ_CP058758:c1841217-1841072 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
