Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2710772..2711043 | Replicon | chromosome |
| Accession | NZ_CP058748 | ||
| Organism | Escherichia coli strain STLIN_13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2710810..2710912 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2710772..2711043 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS99_RS12975 | 2707929..2709368 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HZS99_RS12980 | 2709486..2709722 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HZS99_RS12985 | 2709827..2710018 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HZS99_RS12990 | 2710019..2710675 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 2710772..2711043 | + | 272 | - | - | Antitoxin |
| - | 2710810..2710912 | - | 103 | - | - | Toxin |
| HZS99_RS12995 | 2711071..2711412 | - | 342 | WP_000976484.1 | YebY family protein | - |
| HZS99_RS13000 | 2711425..2712297 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| HZS99_RS13005 | 2712301..2712675 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| HZS99_RS13010 | 2712814..2713044 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZS99_RS13015 | 2713146..2713802 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZS99_RS13020 | 2713826..2714488 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167342 NZ_CP058748:c2710912-2710810 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167342 NZ_CP058748:2710772-2711043 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
