Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1945460..1945605 | Replicon | chromosome |
| Accession | NZ_CP058743 | ||
| Organism | Klebsiella pneumoniae strain STLIN_10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1945496..1945598 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1945460..1945605 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS96_RS09580 | 1940590..1942650 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HZS96_RS09585 | 1942654..1943313 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HZS96_RS09590 | 1943392..1943622 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HZS96_RS09595 | 1943735..1944109 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HZS96_RS09600 | 1944113..1944982 | + | 870 | WP_023280292.1 | copper homeostasis membrane protein CopD | - |
| HZS96_RS09605 | 1944999..1945337 | + | 339 | WP_240726274.1 | YebY family protein | - |
| - | 1945460..1945605 | - | 146 | - | - | Antitoxin |
| - | 1945496..1945598 | + | 103 | - | - | Toxin |
| HZS96_RS09610 | 1945974..1946117 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HZS96_RS09615 | 1946222..1947190 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HZS96_RS09620 | 1947347..1948000 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| HZS96_RS09625 | 1947997..1948188 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HZS96_RS09630 | 1948286..1948525 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HZS96_RS09635 | 1948641..1950074 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1874734..1963002 | 88268 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167315 NZ_CP058743:1945496-1945598 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT167315 NZ_CP058743:c1945605-1945460 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
