Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 859290..859782 Replicon chromosome
Accession NZ_CP058742
Organism Streptococcus suis strain 10

Toxin (Protein)


Gene name relE Uniprot ID D5AHJ6
Locus tag SSU10_RS04195 Protein ID WP_011922404.1
Coordinates 859290..859547 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID D5AHJ7
Locus tag SSU10_RS04200 Protein ID WP_012775104.1
Coordinates 859531..859782 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SSU10_RS04175 854924..855994 + 1071 WP_012775101.1 tyrosine recombinase XerS -
SSU10_RS04180 856064..857572 - 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
SSU10_RS04185 857648..858589 - 942 WP_012775102.1 sensor histidine kinase -
SSU10_RS04190 858586..859251 - 666 WP_012775103.1 response regulator transcription factor -
SSU10_RS04195 859290..859547 - 258 WP_011922404.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
SSU10_RS04200 859531..859782 - 252 WP_012775104.1 hypothetical protein Antitoxin
SSU10_RS04205 859874..861844 - 1971 WP_012775105.1 FtsX-like permease family protein -
SSU10_RS04210 861845..862597 - 753 WP_011922409.1 ABC transporter ATP-binding protein -
SSU10_RS04215 862733..863467 - 735 WP_011922410.1 ABC transporter permease -
SSU10_RS04220 863469..864215 - 747 WP_011922411.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(10-75)

Antitoxin

Protein of unknown function DUF6290

(1-75)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9981.62 Da        Isoelectric Point: 10.8924

>T167307 WP_011922404.1 NZ_CP058742:c859547-859290 [Streptococcus suis]
MKTCYKLVPTSRFIKQLKKLDKFTQKQITNYLSSHVTDNPRQYGKALTANRSGQWRYRIGNYRVIVNIEDDKLIVTSIKM
RNGSI

Download         Length: 258 bp

>T167307 NZ_CP075112:c4085026-4084718 [Salmonella enterica subsp. enterica serovar Corvallis]
ATGCAATACATGGTTTATCGCAATAAAGGAAACAGCAAGGCTTATCCTTATTTACTTGATGTGCAAAGCGATATTATTGA
TGAACTGCATACTCGCATGGTTATCCCATTGTTTCCTGTGAGCAGATTGGTAAATAACTCAGTTAAGCGCCTCACGCCCA
CTCTGAATGTGGAAGGTAATGACTATCTGGTGATGACTCACGAAATGGCGAGTATCAGGCTTTCGCAGATTGGTGATGAG
GTGATGGATGTTCGTTCCCACAGGCAAACCATCAAAAATGCTCTCGATTTTATCTTTGACGGGTTCTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9325.59 Da        Isoelectric Point: 3.7666

>AT167307 WP_012775104.1 NZ_CP058742:c859782-859531 [Streptococcus suis]
MAAITLKVSEQDKLFMQAMAKFEGVSLSELIRTKTLEALEDEYDARVADIALSEYEADLAKGIEPISWEEMLEELGLTDE
DLL

Download         Length: 252 bp

>AT167307 NZ_CP075112:c4085268-4085029 [Salmonella enterica subsp. enterica serovar Corvallis]
ATGTCGGGTATGAGTGTACGACATAAAAAAACAGTCAGTGTCACGCTGGAACCTGCATTGCTTCAGCAAGCCCGTGATGC
AGGTATTAATCTGTCAGCGGTGCTTACCGCCGCGCTGAAAGAGGAAATCAGTGCCACAGGCGTTGAACGCTGGAAAGCAG
AAAATAGAGCGGGTTTGCAGGAGCTCAATCGTATTACTGATGAGCACGGCCTTTTATCGGACGATTACAGGACGTTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0Z8U747

Antitoxin

Source ID Structure
AlphaFold DB A0A0Z9GU89

References