Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4732067..4732338 | Replicon | chromosome |
| Accession | NZ_CP058714 | ||
| Organism | Escherichia coli strain M172-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4732105..4732207 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4732067..4732338 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYI45_RS22645 | 4729224..4730663 | + | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HYI45_RS22650 | 4730781..4731017 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HYI45_RS22655 | 4731122..4731313 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HYI45_RS22660 | 4731314..4731970 | - | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| - | 4732067..4732338 | + | 272 | - | - | Antitoxin |
| - | 4732105..4732207 | - | 103 | - | - | Toxin |
| HYI45_RS22665 | 4732366..4732707 | - | 342 | WP_072775549.1 | YebY family protein | - |
| HYI45_RS22670 | 4732720..4733592 | - | 873 | WP_000879322.1 | copper homeostasis membrane protein CopD | - |
| HYI45_RS22675 | 4733596..4733970 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| HYI45_RS22680 | 4734109..4734339 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HYI45_RS22685 | 4734441..4735097 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HYI45_RS22690 | 4735121..4735783 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T167224 NZ_CP058714:c4732207-4732105 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167224 NZ_CP058714:4732067-4732338 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
