Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2476695..2476929 | Replicon | chromosome |
| Accession | NZ_CP058682 | ||
| Organism | Escherichia coli strain MBT-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2476825..2476928 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2476695..2476929 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT35_RS12465 | 2473250..2473912 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HZT35_RS12470 | 2473936..2474592 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HZT35_RS12475 | 2474694..2474924 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZT35_RS12480 | 2475063..2475437 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HZT35_RS12485 | 2475441..2476313 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HZT35_RS12490 | 2476326..2476667 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2476695..2476929 | - | 235 | - | - | Antitoxin |
| - | 2476825..2476928 | + | 104 | - | - | Toxin |
| HZT35_RS12495 | 2477060..2478136 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HZT35_RS12500 | 2478102..2478383 | - | 282 | WP_001443927.1 | excisionase | - |
| HZT35_RS12505 | 2478490..2478678 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2478494..2478672 | + | 179 | NuclAT_1 | - | - |
| - | 2478494..2478672 | + | 179 | NuclAT_1 | - | - |
| - | 2478494..2478672 | + | 179 | NuclAT_1 | - | - |
| - | 2478494..2478672 | + | 179 | NuclAT_1 | - | - |
| HZT35_RS12510 | 2478671..2478865 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| HZT35_RS12515 | 2478922..2479731 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2476326..2544736 | 68410 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167144 NZ_CP058682:2476825-2476928 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT167144 NZ_CP058682:c2476929-2476695 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
