Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3430994..3431265 | Replicon | chromosome |
| Accession | NZ_CP058661 | ||
| Organism | Escherichia coli strain 005008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3431032..3431135 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3430994..3431265 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZR83_RS16425 | 3428151..3429590 | + | 1440 | WP_024191489.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HZR83_RS16430 | 3429708..3429944 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HZR83_RS16435 | 3430049..3430240 | + | 192 | WP_047149202.1 | YebW family protein | - |
| HZR83_RS16440 | 3430241..3430897 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 3430994..3431265 | + | 272 | - | - | Antitoxin |
| - | 3431032..3431135 | - | 104 | - | - | Toxin |
| HZR83_RS16445 | 3431293..3431634 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HZR83_RS16450 | 3431647..3432519 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HZR83_RS16455 | 3432523..3432897 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HZR83_RS16460 | 3433036..3433266 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZR83_RS16465 | 3433368..3434024 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HZR83_RS16470 | 3434048..3434710 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167067 NZ_CP058661:c3431135-3431032 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167067 NZ_CP058661:3430994-3431265 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
