Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2002308..2002579 | Replicon | chromosome |
| Accession | NZ_CP058656 | ||
| Organism | Escherichia coli strain WCHEC035125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2002438..2002541 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2002308..2002579 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZR25_RS09625 | 1998863..1999525 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HZR25_RS09630 | 1999549..2000205 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HZR25_RS09635 | 2000307..2000537 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZR25_RS09640 | 2000676..2001050 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HZR25_RS09645 | 2001054..2001926 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HZR25_RS09650 | 2001939..2002280 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2002308..2002579 | - | 272 | - | - | Antitoxin |
| - | 2002438..2002541 | + | 104 | - | - | Toxin |
| HZR25_RS09655 | 2002676..2003332 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HZR25_RS09660 | 2003333..2003524 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HZR25_RS09665 | 2003629..2003865 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HZR25_RS09670 | 2003983..2005422 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1948777..2005428 | 56651 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167032 NZ_CP058656:2002438-2002541 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167032 NZ_CP058656:c2002579-2002308 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
