166984

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/upstrm_HI1419-dnstrm_HI1420
Location 806794..807390 Replicon chromosome
Accession NZ_CP058644
Organism Pseudomonas yamanorum strain GZD14026

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HZF02_RS03680 Protein ID WP_179448976.1
Coordinates 807088..807390 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HZF02_RS03675 Protein ID WP_155584892.1
Coordinates 806794..807084 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HZF02_RS03655 803160..805235 - 2076 WP_179448973.1 TonB-dependent copper receptor -
HZF02_RS03660 805328..805753 - 426 WP_179448974.1 DUF2946 domain-containing protein -
HZF02_RS03665 805775..806254 - 480 WP_155584894.1 copper chaperone PCu(A)C -
HZF02_RS03670 806301..806696 - 396 WP_179448975.1 DUF2946 domain-containing protein -
HZF02_RS03675 806794..807084 - 291 WP_155584892.1 putative addiction module antidote protein Antitoxin
HZF02_RS03680 807088..807390 - 303 WP_179448976.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
HZF02_RS03685 807637..808356 - 720 WP_179448977.1 cobalt-precorrin-6A reductase -
HZF02_RS03690 808353..809558 - 1206 WP_179448978.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE -
HZF02_RS03695 809682..810962 + 1281 WP_179450917.1 precorrin-3B synthase -
HZF02_RS03700 810955..811581 + 627 WP_155584888.1 precorrin-8X methylmutase -
HZF02_RS03705 811581..812312 + 732 WP_155584887.1 precorrin-2 C(20)-methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(1-97)

Antitoxin

Uncharacterized protein HI1420

(6-95)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11559.42 Da        Isoelectric Point: 9.8284

>T166984 WP_179448976.1 NZ_CP058644:c807390-807088 [Pseudomonas yamanorum]
MIDFDESIEFVRWLEALRDPLAKVRVLTRLRAAELGNFGDCEPVGHGACEMRIHYGSGYRVYFTRRDKVVYLLLIGGDKS
TQKRDIKRARQMAKNLGIKE

Download         Length: 303 bp

>T166984 NZ_CP074577:187061-187459 [Escherichia coli]
ATGCTGAAGTTTATGCTCGATACCAACATCTGCATTTTCACGATAAAGAACAAACCCGCCAGCGTCAGGGAGCGTTTTAA
CCTGAACCAGGGGAGAATGTGTATCAGTTCGGTCACCCTGATGGAGTTGATATATGGTGCAGAAAAAAGCCAGATGCCTG
AACGTAATCTCGCTGTGATCGAGGGATTTGTTTCCCGCATTGATGTTCTGGATTACGACGCTGCCGCAGCCACACACAGC
GGCCAGATAAGAGCAGAACTTGCCCGTCAGGGACGCCCTGTCGGGCCATTTGATCAAATGATCGCAGGTCATGCCCGCAG
TCGGGGACTGATTATTGTGACTAATAACACCCGGGAATTTGAACGTGTGGACGGTCTGAGAATTGAAGACTGGAGCTGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10361.84 Da        Isoelectric Point: 5.0491

>AT166984 WP_155584892.1 NZ_CP058644:c807084-806794 [Pseudomonas yamanorum]
MSESFTRFDAANYLKTPEDMAAYLDACFEEDAGDGLLIRTALNDIARAQGMTQVARNAGLGRESLYKALSSTGNPEFATI
MKVMKALGLKLHATAI

Download         Length: 291 bp

>AT166984 NZ_CP074577:186834-187061 [Escherichia coli]
ATGGAAACCACCGTATTTTTCAGCAACCGCAGCCAGGCGGTCAGACTGCCAAAAGCGGTTGCATTGCCGGAAAACGTAAA
ACGCGTTGAAGTGATTGCTGTCGGACGAACCAGAATCATTACGCCAGCCGGAGAGACATGGGACGAATGGTTCGACGGAC
ACAACGTCAGCGCCGATTTTATGGATAACAGGGAACAGCCCGGCATGCAGGAAAGGGAGTCATTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References