Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2260958..2261226 | Replicon | chromosome |
| Accession | NZ_CP058596 | ||
| Organism | Escherichia coli strain UPEC_U013 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2261086..2261188 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2260958..2261226 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYE75_RS10490 | 2257510..2258172 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HYE75_RS10495 | 2258196..2258852 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| HYE75_RS10500 | 2258955..2259185 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HYE75_RS10505 | 2259324..2259698 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HYE75_RS10510 | 2259702..2260574 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HYE75_RS10515 | 2260587..2260928 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2260958..2261226 | - | 269 | - | - | Antitoxin |
| - | 2261086..2261188 | + | 103 | - | - | Toxin |
| HYE75_RS10520 | 2261323..2261979 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| HYE75_RS10525 | 2261980..2262171 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HYE75_RS10530 | 2262276..2262512 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HYE75_RS10535 | 2262630..2264069 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T166883 NZ_CP058596:2261086-2261188 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT166883 NZ_CP058596:c2261226-2260958 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
