Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2146907..2147178 | Replicon | chromosome |
| Accession | NZ_CP058574 | ||
| Organism | Escherichia coli strain EC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2147037..2147140 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2146907..2147178 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYH05_RS10225 | 2143462..2144124 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HYH05_RS10230 | 2144148..2144804 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| HYH05_RS10235 | 2144906..2145136 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HYH05_RS10240 | 2145275..2145649 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| HYH05_RS10245 | 2145653..2146525 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| HYH05_RS10250 | 2146538..2146879 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2146907..2147178 | - | 272 | - | - | Antitoxin |
| - | 2147037..2147140 | + | 104 | - | - | Toxin |
| HYH05_RS10255 | 2147275..2147931 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HYH05_RS10260 | 2147932..2148123 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HYH05_RS10265 | 2148228..2148464 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HYH05_RS10270 | 2148582..2150021 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2123120..2163017 | 39897 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166841 NZ_CP058574:2147037-2147140 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT166841 NZ_CP058574:c2147178-2146907 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
