Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 102794..102939 | Replicon | chromosome |
| Accession | NZ_CP058548 | ||
| Organism | Klebsiella pneumoniae strain S165-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 102801..102903 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 102794..102939 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXT63_RS00500 | 98325..99758 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HXT63_RS00505 | 99874..100113 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HXT63_RS00510 | 100211..100402 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HXT63_RS00515 | 100399..101052 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HXT63_RS00520 | 101209..102177 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HXT63_RS00525 | 102282..102425 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 102794..102939 | + | 146 | - | - | Antitoxin |
| - | 102801..102903 | - | 103 | - | - | Toxin |
| HXT63_RS00530 | 103062..103400 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HXT63_RS00535 | 103417..104286 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| HXT63_RS00540 | 104290..104664 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HXT63_RS00545 | 104777..105007 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HXT63_RS00550 | 105086..105745 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HXT63_RS00555 | 105749..107809 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T166774 NZ_CP058548:c102903-102801 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT166774 NZ_CP058548:102794-102939 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
