Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2489250..2489395 | Replicon | chromosome |
| Accession | NZ_CP058544 | ||
| Organism | Klebsiella pneumoniae strain S161-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2489286..2489388 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2489250..2489395 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYH18_RS12045 | 2484380..2486440 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HYH18_RS12050 | 2486444..2487103 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HYH18_RS12055 | 2487182..2487412 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HYH18_RS12060 | 2487525..2487899 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| HYH18_RS12065 | 2487903..2488772 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| HYH18_RS12070 | 2488789..2489127 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2489250..2489395 | - | 146 | - | - | Antitoxin |
| - | 2489286..2489388 | + | 103 | - | - | Toxin |
| HYH18_RS12075 | 2489764..2489907 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HYH18_RS12080 | 2490012..2490980 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HYH18_RS12085 | 2491137..2491790 | + | 654 | WP_094310679.1 | protein-serine/threonine phosphatase | - |
| HYH18_RS12090 | 2491787..2491978 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HYH18_RS12095 | 2492076..2492315 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HYH18_RS12100 | 2492431..2493864 | - | 1434 | WP_094310678.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T166759 NZ_CP058544:2489286-2489388 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT166759 NZ_CP058544:c2489395-2489250 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
