Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1987357..1987628 | Replicon | chromosome |
| Accession | NZ_CP058355 | ||
| Organism | Escherichia coli strain AMSCJX03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1987487..1987590 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1987357..1987628 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS77_RS09385 | 1983912..1984574 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HXS77_RS09390 | 1984598..1985254 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| HXS77_RS09395 | 1985356..1985586 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HXS77_RS09400 | 1985725..1986099 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HXS77_RS09405 | 1986103..1986975 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HXS77_RS09410 | 1986988..1987329 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1987357..1987628 | - | 272 | - | - | Antitoxin |
| - | 1987487..1987590 | + | 104 | - | - | Toxin |
| HXS77_RS09415 | 1987725..1988381 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| HXS77_RS09420 | 1988382..1988573 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HXS77_RS09425 | 1988678..1988914 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| HXS77_RS09430 | 1989032..1990471 | - | 1440 | WP_089582284.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166677 NZ_CP058355:1987487-1987590 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT166677 NZ_CP058355:c1987628-1987357 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
