Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957791..1957931 | Replicon | chromosome |
| Accession | NZ_CP058353 | ||
| Organism | Serratia marcescens strain ESE2014 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957835..1957931 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957791..1957931 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW877_RS09335 (HW877_09345) | 1953059..1953454 | + | 396 | WP_033640666.1 | RidA family protein | - |
| HW877_RS09340 (HW877_09350) | 1953611..1954564 | + | 954 | WP_033641435.1 | prolyl aminopeptidase | - |
| HW877_RS09345 (HW877_09355) | 1954596..1954826 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| HW877_RS09350 (HW877_09360) | 1955171..1955689 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| HW877_RS09355 (HW877_09365) | 1955982..1956398 | + | 417 | WP_042706245.1 | CopC domain-containing protein YobA | - |
| HW877_RS09360 (HW877_09370) | 1956401..1957282 | + | 882 | WP_244758097.1 | copper homeostasis membrane protein CopD | - |
| HW877_RS09365 (HW877_09375) | 1957352..1957693 | + | 342 | WP_244758098.1 | YebY family protein | - |
| - | 1957791..1957931 | - | 141 | - | - | Antitoxin |
| - | 1957835..1957931 | + | 97 | - | - | Toxin |
| HW877_RS09370 (HW877_09380) | 1958010..1959092 | - | 1083 | WP_244758099.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HW877_RS09375 (HW877_09385) | 1959067..1959342 | - | 276 | WP_015377485.1 | excisionase | - |
| HW877_RS09380 (HW877_09390) | 1959418..1960485 | - | 1068 | WP_244758100.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1949773..2018537 | 68764 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T166656 NZ_CP058353:1957835-1957931 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT166656 NZ_CP058353:c1957931-1957791 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
