Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2096133..2096404 | Replicon | chromosome |
| Accession | NZ_CP058308 | ||
| Organism | Escherichia coli strain AMSCJX04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2096263..2096366 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2096133..2096404 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS78_RS10025 | 2092688..2093350 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HXS78_RS10030 | 2093374..2094030 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HXS78_RS10035 | 2094132..2094362 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HXS78_RS10040 | 2094501..2094875 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HXS78_RS10045 | 2094879..2095751 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HXS78_RS10050 | 2095764..2096105 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2096133..2096404 | - | 272 | - | - | Antitoxin |
| - | 2096263..2096366 | + | 104 | - | - | Toxin |
| HXS78_RS10055 | 2096501..2097157 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HXS78_RS10060 | 2097158..2097349 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HXS78_RS10065 | 2097454..2097690 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HXS78_RS10070 | 2097808..2099247 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166494 NZ_CP058308:2096263-2096366 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT166494 NZ_CP058308:c2096404-2096133 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
