Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 289073..289344 | Replicon | chromosome |
| Accession | NZ_CP058302 | ||
| Organism | Escherichia coli strain AH65 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 289111..289214 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 289073..289344 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUU85_RS01445 | 286230..287669 | + | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUU85_RS01450 | 287787..288023 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| HUU85_RS01455 | 288128..288319 | + | 192 | WP_001338167.1 | YebW family protein | - |
| HUU85_RS01460 | 288320..288976 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 289073..289344 | + | 272 | - | - | Antitoxin |
| - | 289111..289214 | - | 104 | - | - | Toxin |
| HUU85_RS01465 | 289372..289713 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HUU85_RS01470 | 289726..290598 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HUU85_RS01475 | 290602..290976 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| HUU85_RS01480 | 291115..291345 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUU85_RS01485 | 291447..292103 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| HUU85_RS01490 | 292127..292789 | + | 663 | WP_174580251.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166438 NZ_CP058302:c289214-289111 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT166438 NZ_CP058302:289073-289344 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
