Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2847622..2847767 | Replicon | chromosome |
| Accession | NZ_CP058253 | ||
| Organism | Enterobacter roggenkampii strain ED5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2847629..2847732 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2847622..2847767 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ED5_RS13465 | 2842843..2844285 | + | 1443 | WP_177317637.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ED5_RS13470 | 2844392..2844631 | + | 240 | WP_008500472.1 | YebV family protein | - |
| ED5_RS13475 | 2844666..2845310 | - | 645 | WP_095442391.1 | protein-serine/threonine phosphatase | - |
| ED5_RS13480 | 2845477..2846418 | + | 942 | WP_135346444.1 | VirK/YbjX family protein | - |
| ED5_RS13485 | 2846725..2847216 | - | 492 | WP_177317638.1 | hypothetical protein | - |
| - | 2847622..2847767 | + | 146 | - | - | Antitoxin |
| - | 2847629..2847732 | - | 104 | - | - | Toxin |
| ED5_RS13490 | 2847871..2848209 | - | 339 | WP_008500468.1 | YebY family protein | - |
| ED5_RS13495 | 2848226..2849095 | - | 870 | WP_177317639.1 | copper homeostasis membrane protein CopD | - |
| ED5_RS13500 | 2849097..2849468 | - | 372 | WP_126325542.1 | CopC domain-containing protein YobA | - |
| ED5_RS13505 | 2849606..2849836 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| ED5_RS13510 | 2849947..2850597 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| ED5_RS13515 | 2850622..2851284 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166411 NZ_CP058253:c2847732-2847629 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT166411 NZ_CP058253:2847622-2847767 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
