Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2031512..2031657 | Replicon | chromosome |
| Accession | NZ_CP058226 | ||
| Organism | Klebsiella pneumoniae strain KPCZA02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2031548..2031650 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2031512..2031657 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWQ20_RS09945 (HWQ20_09950) | 2026642..2028702 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HWQ20_RS09950 (HWQ20_09955) | 2028706..2029365 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HWQ20_RS09955 (HWQ20_09960) | 2029444..2029674 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HWQ20_RS09960 (HWQ20_09965) | 2029787..2030161 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HWQ20_RS09965 (HWQ20_09970) | 2030165..2031034 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| HWQ20_RS09970 (HWQ20_09975) | 2031051..2031389 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2031512..2031657 | - | 146 | - | - | Antitoxin |
| - | 2031548..2031650 | + | 103 | - | - | Toxin |
| HWQ20_RS09975 (HWQ20_09980) | 2032025..2032168 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HWQ20_RS09980 (HWQ20_09985) | 2032273..2033241 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HWQ20_RS09985 (HWQ20_09990) | 2033398..2034051 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HWQ20_RS09990 (HWQ20_09995) | 2034048..2034239 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HWQ20_RS09995 (HWQ20_10000) | 2034337..2034576 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HWQ20_RS10000 (HWQ20_10005) | 2034692..2036125 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T166289 NZ_CP058226:2031548-2031650 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT166289 NZ_CP058226:c2031657-2031512 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
