Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3228653..3228924 | Replicon | chromosome |
| Accession | NZ_CP058223 | ||
| Organism | Escherichia coli strain 550 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3228783..3228886 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3228653..3228924 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWQ66_RS15055 | 3225208..3225870 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HWQ66_RS15060 | 3225894..3226550 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| HWQ66_RS15065 | 3226652..3226882 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HWQ66_RS15070 | 3227021..3227395 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| HWQ66_RS15075 | 3227399..3228271 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| HWQ66_RS15080 | 3228284..3228625 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 3228653..3228924 | - | 272 | - | - | Antitoxin |
| - | 3228783..3228886 | + | 104 | - | - | Toxin |
| HWQ66_RS15085 | 3229021..3229677 | + | 657 | WP_001546849.1 | protein-serine/threonine phosphatase | - |
| HWQ66_RS15090 | 3229678..3229869 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HWQ66_RS15095 | 3229974..3230210 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HWQ66_RS15100 | 3230328..3231767 | - | 1440 | WP_176966442.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3221343..3245474 | 24131 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166268 NZ_CP058223:3228783-3228886 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT166268 NZ_CP058223:c3228924-3228653 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
