Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4698041..4698876 | Replicon | chromosome |
| Accession | NZ_CP058222 | ||
| Organism | Escherichia coli strain CFT073 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | Q8VR61 |
| Locus tag | HW370_RS22850 | Protein ID | WP_000854747.1 |
| Coordinates | 4698499..4698876 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | HW370_RS22845 | Protein ID | WP_024182258.1 |
| Coordinates | 4698041..4698409 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW370_RS22810 (4693953) | 4693953..4694633 | + | 681 | WP_001282928.1 | WYL domain-containing protein | - |
| HW370_RS22815 (4694781) | 4694781..4695458 | + | 678 | WP_001097307.1 | hypothetical protein | - |
| HW370_RS22820 (4695464) | 4695464..4695697 | + | 234 | WP_001278280.1 | DUF905 family protein | - |
| HW370_RS22825 (4695787) | 4695787..4696605 | + | 819 | WP_001175140.1 | DUF932 domain-containing protein | - |
| HW370_RS22830 (4696696) | 4696696..4697181 | + | 486 | WP_000860054.1 | antirestriction protein | - |
| HW370_RS22835 (4697196) | 4697196..4697672 | + | 477 | WP_001186756.1 | RadC family protein | - |
| HW370_RS22840 (4697741) | 4697741..4697962 | + | 222 | WP_000692312.1 | DUF987 domain-containing protein | - |
| HW370_RS22845 (4698041) | 4698041..4698409 | + | 369 | WP_024182258.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| HW370_RS22850 (4698499) | 4698499..4698876 | + | 378 | WP_000854747.1 | TA system toxin CbtA family protein | Toxin |
| HW370_RS22855 (4698873) | 4698873..4699361 | + | 489 | WP_000761667.1 | DUF5983 family protein | - |
| HW370_RS22860 (4699373) | 4699373..4699570 | + | 198 | WP_000839291.1 | DUF957 domain-containing protein | - |
| HW370_RS22865 (4699655) | 4699655..4700173 | + | 519 | Protein_4484 | DUF4942 domain-containing protein | - |
| HW370_RS22870 (4700239) | 4700239..4700994 | - | 756 | WP_000065240.1 | IS21-like element ISEc10 family helper ATPase IstB | - |
| HW370_RS22875 (4700991) | 4700991..4702490 | - | 1500 | WP_000174402.1 | IS21-like element ISEc10 family transposase | - |
| HW370_RS22880 (4702584) | 4702584..4702925 | + | 342 | Protein_4487 | DUF4942 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | htpB / papI / papB / papA / papH / papC / papD / papJ / papK / papE / papF / papG | 4634831..4702490 | 67659 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14095.03 Da Isoelectric Point: 6.8524
>T166254 WP_000854747.1 NZ_CP058222:4698499-4698876 [Escherichia coli]
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPEF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNDITLGKHPEAKQ
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPEF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNDITLGKHPEAKQ
Download Length: 378 bp
>T166254 NZ_CP074096:4563433-4563924 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGATCTCCTCCCCTGAGCCGCTTCATGCCGGACATATTCTTACTCCGTTTTGCTGCGGTGTGGATTCTATGGATAACTG
GCTGAAACAGCGGGCGATGAAAAATCAGACCACTGGTGCGTCCCGTACCTTTGTGTGTTGTGGCAGCGATTCGAACGTAC
TGGCCTATTACTCGCTGGCGTCCAGCGCGGTCACGACGAATACCGCCCCCGGTCGCTTTCGTCGCAATATGCCTGACCCG
ATTCCGATTGTGGTATTGGGGCGTCTGGCGGTGGATAAATCGCTTCATGGGCAGGGCGTTGGTCGGGCGCTGGTACGCGA
CGCAGGGCTGCGGGTTATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCGC
GGGAATTTTACCAGCGGGTGGGGTTTGAACCATCGCCGATGGATCCGATGATGTTGATGGTGACGTTGGGGGATTTGGTG
GAGAGTGTTTAA
ATGATCTCCTCCCCTGAGCCGCTTCATGCCGGACATATTCTTACTCCGTTTTGCTGCGGTGTGGATTCTATGGATAACTG
GCTGAAACAGCGGGCGATGAAAAATCAGACCACTGGTGCGTCCCGTACCTTTGTGTGTTGTGGCAGCGATTCGAACGTAC
TGGCCTATTACTCGCTGGCGTCCAGCGCGGTCACGACGAATACCGCCCCCGGTCGCTTTCGTCGCAATATGCCTGACCCG
ATTCCGATTGTGGTATTGGGGCGTCTGGCGGTGGATAAATCGCTTCATGGGCAGGGCGTTGGTCGGGCGCTGGTACGCGA
CGCAGGGCTGCGGGTTATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCGC
GGGAATTTTACCAGCGGGTGGGGTTTGAACCATCGCCGATGGATCCGATGATGTTGATGGTGACGTTGGGGGATTTGGTG
GAGAGTGTTTAA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13497.32 Da Isoelectric Point: 6.7344
>AT166254 WP_024182258.1 NZ_CP058222:4698041-4698409 [Escherichia coli]
VSDTLPGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLGQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGCVYLAVYPTPETKK
VSDTLPGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLGQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGCVYLAVYPTPETKK
Download Length: 369 bp
>AT166254 NZ_CP074096:4563143-4563436 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGTCAGCCGCAAACAGTATGGCGATGAAACGCGAAACCCTGAACCTGCGTATCAAACCCGCCGAGCGCGATCTTATCGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACAGACTTTGTGCTGGAAGCTGCCCGCGCTGCCGCAGAGGAAGCGCTGA
TCGAACAACGCATCATTATGGCCGATCCACAGGCTTATCAGGAATTTCTGGCTCGTTTGGATCAAACACCTTCACCTAAT
GCCGCACTGCGTAAAACCATGCAGACCCCTGCGCCGTGGGAGCAGGAAAAATGA
ATGTCAGCCGCAAACAGTATGGCGATGAAACGCGAAACCCTGAACCTGCGTATCAAACCCGCCGAGCGCGATCTTATCGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACAGACTTTGTGCTGGAAGCTGCCCGCGCTGCCGCAGAGGAAGCGCTGA
TCGAACAACGCATCATTATGGCCGATCCACAGGCTTATCAGGAATTTCTGGCTCGTTTGGATCAAACACCTTCACCTAAT
GCCGCACTGCGTAAAACCATGCAGACCCCTGCGCCGTGGGAGCAGGAAAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|