Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2246798..2247066 | Replicon | chromosome |
| Accession | NZ_CP058217 | ||
| Organism | Escherichia coli Nissle 1917 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2246926..2247028 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2246798..2247066 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW372_RS10565 | 2243350..2244012 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HW372_RS10570 | 2244036..2244692 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HW372_RS10575 | 2244795..2245025 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HW372_RS10580 | 2245164..2245538 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HW372_RS10585 | 2245542..2246414 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HW372_RS10590 | 2246427..2246768 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2246798..2247066 | - | 269 | - | - | Antitoxin |
| - | 2246926..2247028 | + | 103 | - | - | Toxin |
| HW372_RS10595 | 2247163..2247819 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| HW372_RS10600 | 2247820..2248011 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HW372_RS10605 | 2248116..2248352 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HW372_RS10610 | 2248470..2249909 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T166180 NZ_CP058217:2246926-2247028 [Escherichia coli Nissle 1917]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT166180 NZ_CP058217:c2247066-2246798 [Escherichia coli Nissle 1917]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
