Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2248953..2249121 | Replicon | chromosome |
| Accession | NZ_CP058212 | ||
| Organism | Klebsiella michiganensis strain RHB20-C02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2249011..2249114 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2248953..2249121 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX57_RS10690 | 2244080..2246140 | + | 2061 | WP_143439875.1 | oligopeptidase B | - |
| HVX57_RS10695 | 2246147..2246806 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| HVX57_RS10700 | 2246885..2247115 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HVX57_RS10705 | 2247251..2247625 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| HVX57_RS10710 | 2247630..2248499 | + | 870 | WP_025106130.1 | copper homeostasis membrane protein CopD | - |
| HVX57_RS10715 | 2248516..2248854 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2248953..2249121 | - | 169 | - | - | Antitoxin |
| - | 2249011..2249114 | + | 104 | - | - | Toxin |
| HVX57_RS10720 | 2249239..2250198 | - | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| HVX57_RS10725 | 2250213..2252543 | - | 2331 | WP_143439874.1 | fimbria/pilus outer membrane usher protein | - |
| HVX57_RS10730 | 2252546..2253310 | - | 765 | WP_134897814.1 | molecular chaperone | - |
| HVX57_RS10735 | 2253329..2253847 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166158 NZ_CP058212:2249011-2249114 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT166158 NZ_CP058212:c2249121-2248953 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
