Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 852017..852262 | Replicon | chromosome |
| Accession | NZ_CP058209 | ||
| Organism | Escherichia marmotae strain RHB24-C12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 852031..852134 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 852017..852262 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY12_RS04305 | 849138..850577 | + | 1440 | WP_024214557.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HVY12_RS04310 | 850693..850929 | + | 237 | WP_001516264.1 | DUF1480 family protein | - |
| HVY12_RS04315 | 851034..851225 | + | 192 | WP_001516263.1 | YebW family protein | - |
| HVY12_RS04320 | 851226..851882 | - | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| - | 852017..852262 | + | 246 | - | - | Antitoxin |
| - | 852031..852134 | - | 104 | - | - | Toxin |
| HVY12_RS04325 | 852292..852633 | - | 342 | WP_000976465.1 | YebY family protein | - |
| HVY12_RS04330 | 852646..853518 | - | 873 | WP_181237963.1 | copper homeostasis membrane protein CopD | - |
| HVY12_RS04335 | 853522..853896 | - | 375 | WP_181237964.1 | CopC domain-containing protein YobA | - |
| HVY12_RS04340 | 854035..854265 | + | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| HVY12_RS04345 | 854366..855022 | + | 657 | WP_061090866.1 | carbon-nitrogen hydrolase family protein | - |
| HVY12_RS04350 | 855047..855709 | + | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| HVY12_RS04355 | 855706..856188 | - | 483 | Protein_857 | prolyl oligopeptidase family serine peptidase | - |
| HVY12_RS04360 | 856282..857037 | - | 756 | WP_001282653.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166127 NZ_CP058209:c852134-852031 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT166127 NZ_CP058209:852017-852262 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCATTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCATTCTGGTGAAAGCACCCGGGCGG
TTTTTT
