Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2838715..2838916 | Replicon | chromosome |
| Accession | NZ_CP058191 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00012 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2838720..2838823 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2838715..2838916 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV033_RS13465 | 2834962..2836425 | + | 1464 | WP_045308319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV033_RS13470 | 2836530..2836769 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV033_RS13475 | 2836804..2837448 | - | 645 | WP_023306475.1 | protein-serine/threonine phosphatase | - |
| HV033_RS13480 | 2837616..2838596 | + | 981 | WP_063146319.1 | VirK/YbjX family protein | - |
| HV033_RS13485 | 2838642..2838839 | + | 198 | WP_063146318.1 | hypothetical protein | - |
| - | 2838715..2838916 | + | 202 | - | - | Antitoxin |
| - | 2838720..2838823 | - | 104 | - | - | Toxin |
| HV033_RS13490 | 2838965..2839303 | - | 339 | WP_063146317.1 | YebY family protein | - |
| HV033_RS13495 | 2839320..2840189 | - | 870 | WP_063146316.1 | copper homeostasis membrane protein CopD | - |
| HV033_RS13500 | 2840191..2840560 | - | 370 | Protein_2642 | CopC domain-containing protein YobA | - |
| HV033_RS13505 | 2840698..2840928 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV033_RS13510 | 2841040..2841678 | + | 639 | WP_023300434.1 | carbon-nitrogen hydrolase family protein | - |
| HV033_RS13515 | 2841703..2842365 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166081 NZ_CP058191:c2838823-2838720 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT166081 NZ_CP058191:2838715-2838916 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
