Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2723693..2723894 Replicon chromosome
Accession NZ_CP058187
Organism Enterobacter hormaechei strain RHBSTW-00016

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2723698..2723801 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2723693..2723894 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV036_RS13020 2719940..2721403 + 1464 WP_032671284.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
HV036_RS13025 2721508..2721747 + 240 WP_006811010.1 YebV family protein -
HV036_RS13030 2721782..2722426 - 645 WP_023306475.1 protein-serine/threonine phosphatase -
HV036_RS13035 2722594..2723574 + 981 WP_023306476.1 VirK/YbjX family protein -
- 2723693..2723894 + 202 - - Antitoxin
- 2723698..2723801 - 104 - - Toxin
HV036_RS13040 2723944..2724282 - 339 WP_022648464.1 YebY family protein -
HV036_RS13045 2724299..2725168 - 870 WP_023300432.1 copper homeostasis membrane protein CopD -
HV036_RS13050 2725170..2725541 - 372 WP_023300433.1 CopC domain-containing protein YobA -
HV036_RS13055 2725679..2725909 + 231 WP_003859784.1 DNA polymerase III subunit theta -
HV036_RS13060 2726021..2726659 + 639 WP_022648467.1 carbon-nitrogen hydrolase family protein -
HV036_RS13065 2726684..2727346 + 663 WP_022648468.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T166063 NZ_CP058187:c2723801-2723698 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 202 bp

>AT166063 NZ_CP058187:2723693-2723894 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References