Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2222727..2222895 | Replicon | chromosome |
| Accession | NZ_CP058180 | ||
| Organism | Klebsiella grimontii strain RHBSTW-00039 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2222785..2222888 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2222727..2222895 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV042_RS10780 | 2217854..2219914 | + | 2061 | WP_049085565.1 | oligopeptidase B | - |
| HV042_RS10785 | 2219921..2220580 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| HV042_RS10790 | 2220659..2220889 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV042_RS10795 | 2221025..2221399 | + | 375 | WP_049085566.1 | CopC domain-containing protein YobA | - |
| HV042_RS10800 | 2221404..2222273 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| HV042_RS10805 | 2222290..2222628 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2222727..2222895 | - | 169 | - | - | Antitoxin |
| - | 2222785..2222888 | + | 104 | - | - | Toxin |
| HV042_RS10810 | 2223013..2223972 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| HV042_RS10815 | 2223987..2226317 | - | 2331 | WP_181245134.1 | fimbria/pilus outer membrane usher protein | - |
| HV042_RS10820 | 2226320..2227084 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| HV042_RS10825 | 2227103..2227621 | - | 519 | WP_032711055.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166048 NZ_CP058180:2222785-2222888 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT166048 NZ_CP058180:c2222895-2222727 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
