Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2821479..2821680 | Replicon | chromosome |
| Accession | NZ_CP058175 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00040 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2821484..2821587 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2821479..2821680 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV043_RS13855 | 2817726..2819189 | + | 1464 | WP_032671284.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV043_RS13860 | 2819294..2819533 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV043_RS13865 | 2819568..2820212 | - | 645 | WP_023306475.1 | protein-serine/threonine phosphatase | - |
| HV043_RS13870 | 2820380..2821360 | + | 981 | WP_023306476.1 | VirK/YbjX family protein | - |
| - | 2821479..2821680 | + | 202 | - | - | Antitoxin |
| - | 2821484..2821587 | - | 104 | - | - | Toxin |
| HV043_RS13875 | 2821730..2822068 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV043_RS13880 | 2822085..2822954 | - | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| HV043_RS13885 | 2822956..2823327 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV043_RS13890 | 2823465..2823695 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV043_RS13895 | 2823807..2824445 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| HV043_RS13900 | 2824470..2825132 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166034 NZ_CP058175:c2821587-2821484 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT166034 NZ_CP058175:2821479-2821680 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
