Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2995372..2995573 | Replicon | chromosome |
| Accession | NZ_CP058172 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00056 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2995377..2995480 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2995372..2995573 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV047_RS15020 | 2991619..2993082 | + | 1464 | WP_045308319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV047_RS15025 | 2993187..2993426 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV047_RS15030 | 2993461..2994105 | - | 645 | WP_046619437.1 | protein-serine/threonine phosphatase | - |
| HV047_RS15035 | 2994273..2995253 | + | 981 | WP_155025816.1 | VirK/YbjX family protein | - |
| HV047_RS15040 | 2995299..2995496 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2995372..2995573 | + | 202 | - | - | Antitoxin |
| - | 2995377..2995480 | - | 104 | - | - | Toxin |
| HV047_RS15045 | 2995622..2995960 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV047_RS15050 | 2995977..2996846 | - | 870 | WP_046619433.1 | copper homeostasis membrane protein CopD | - |
| HV047_RS15055 | 2996848..2997219 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV047_RS15060 | 2997357..2997587 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV047_RS15065 | 2997699..2998337 | + | 639 | WP_023300434.1 | carbon-nitrogen hydrolase family protein | - |
| HV047_RS15070 | 2998362..2999024 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166020 NZ_CP058172:c2995480-2995377 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT166020 NZ_CP058172:2995372-2995573 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
