Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2779729..2779930 | Replicon | chromosome |
| Accession | NZ_CP058167 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00059 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2779734..2779837 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2779729..2779930 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV048_RS13230 | 2775976..2777439 | + | 1464 | WP_032671284.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV048_RS13235 | 2777544..2777783 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV048_RS13240 | 2777818..2778462 | - | 645 | WP_023306475.1 | protein-serine/threonine phosphatase | - |
| HV048_RS13245 | 2778630..2779610 | + | 981 | WP_023306476.1 | VirK/YbjX family protein | - |
| - | 2779729..2779930 | + | 202 | - | - | Antitoxin |
| - | 2779734..2779837 | - | 104 | - | - | Toxin |
| HV048_RS13250 | 2779980..2780318 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV048_RS13255 | 2780335..2781204 | - | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| HV048_RS13260 | 2781206..2781577 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV048_RS13265 | 2781715..2781945 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV048_RS13270 | 2782057..2782695 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| HV048_RS13275 | 2782720..2783382 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166003 NZ_CP058167:c2779837-2779734 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT166003 NZ_CP058167:2779729-2779930 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
