Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2682775..2682976 | Replicon | chromosome |
| Accession | NZ_CP058164 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00070 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2682780..2682883 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2682775..2682976 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV054_RS12695 | 2679022..2680485 | + | 1464 | WP_032622418.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV054_RS12700 | 2680590..2680829 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV054_RS12705 | 2680864..2681508 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| HV054_RS12710 | 2681676..2682656 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| HV054_RS12715 | 2682702..2682899 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2682775..2682976 | + | 202 | - | - | Antitoxin |
| - | 2682780..2682883 | - | 104 | - | - | Toxin |
| HV054_RS12720 | 2683025..2683363 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV054_RS12725 | 2683380..2684249 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| HV054_RS12730 | 2684251..2684622 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| HV054_RS12735 | 2684760..2684990 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV054_RS12740 | 2685102..2685740 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| HV054_RS12745 | 2685765..2686427 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165986 NZ_CP058164:c2682883-2682780 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT165986 NZ_CP058164:2682775-2682976 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
