Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | yfjZ-ypjF/CbtA-CbeA |
Location | 975933..976642 | Replicon | chromosome |
Accession | NZ_CP058153 | ||
Organism | Enterobacter hormaechei strain RHBSTW-00105 |
Toxin (Protein)
Gene name | ypjF | Uniprot ID | A0A7D6YAQ1 |
Locus tag | HV071_RS04665 | Protein ID | WP_071886833.1 |
Coordinates | 976274..976642 (+) | Length | 123 a.a. |
Antitoxin (Protein)
Gene name | yfjZ | Uniprot ID | - |
Locus tag | HV071_RS04660 | Protein ID | WP_047051179.1 |
Coordinates | 975933..976253 (+) | Length | 107 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HV071_RS04620 | 971493..972327 | + | 835 | Protein_890 | DUF945 domain-containing protein | - |
HV071_RS04625 | 972529..973233 | + | 705 | WP_047051185.1 | WYL domain-containing protein | - |
HV071_RS04630 | 973230..973844 | + | 615 | WP_047051184.1 | hypothetical protein | - |
HV071_RS04635 | 973933..974343 | + | 411 | WP_047051183.1 | hypothetical protein | - |
HV071_RS04640 | 974420..974656 | + | 237 | WP_047051182.1 | DUF905 domain-containing protein | - |
HV071_RS04645 | 974736..975194 | + | 459 | WP_047051181.1 | antirestriction protein | - |
HV071_RS04650 | 975203..975685 | + | 483 | WP_075211782.1 | DNA repair protein RadC | - |
HV071_RS04655 | 975694..975915 | + | 222 | WP_016243789.1 | DUF987 domain-containing protein | - |
HV071_RS04660 | 975933..976253 | + | 321 | WP_047051179.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
HV071_RS04665 | 976274..976642 | + | 369 | WP_071886833.1 | TA system toxin CbtA family protein | Toxin |
HV071_RS04670 | 976988..977734 | - | 747 | WP_047051178.1 | class I SAM-dependent methyltransferase | - |
HV071_RS04675 | 977745..978002 | - | 258 | WP_003863178.1 | YjhX family toxin | - |
HV071_RS04680 | 978262..980199 | - | 1938 | WP_047051177.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
HV071_RS04685 | 980217..980723 | - | 507 | WP_181238541.1 | oxidoreductase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | - | 941104..976642 | 35538 | |
- | flank | IS/Tn | - | - | 980847..981827 | 980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 123 a.a. Molecular weight: 13738.90 Da Isoelectric Point: 8.1347
>T165922 WP_071886833.1 NZ_CP058153:976274-976642 [Enterobacter hormaechei]
MKTLPATISRAAKPCLSPVAVWQMLLTRLLEKHYGLTLNDTPFCDQTVIQEHIDAGITLANAVNFLVEKYELVRIDRTGF
TSQEQAPYLTVTDILHARRACGLMNSCSYREVSNIVLSRSRQ
MKTLPATISRAAKPCLSPVAVWQMLLTRLLEKHYGLTLNDTPFCDQTVIQEHIDAGITLANAVNFLVEKYELVRIDRTGF
TSQEQAPYLTVTDILHARRACGLMNSCSYREVSNIVLSRSRQ
Download Length: 369 bp
>T165922 NZ_CP074001:814293-814700 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA
Antitoxin
Download Length: 107 a.a. Molecular weight: 11901.60 Da Isoelectric Point: 7.2633
>AT165922 WP_047051179.1 NZ_CP058153:975933-976253 [Enterobacter hormaechei]
MRSNATWGLQRDITPRLGARLVQEGNRLHYLADRASITGKFSDAECLKLDVAFPHFISLMESMLTTGEMNPRHAHCVTLY
RNGFTCEADTLGSCGYLYIVVYPTQS
MRSNATWGLQRDITPRLGARLVQEGNRLHYLADRASITGKFSDAECLKLDVAFPHFISLMESMLTTGEMNPRHAHCVTLY
RNGFTCEADTLGSCGYLYIVVYPTQS
Download Length: 321 bp
>AT165922 NZ_CP074001:814046-814312 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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