Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2709672..2709873 | Replicon | chromosome |
| Accession | NZ_CP058149 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00114 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2709677..2709780 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2709672..2709873 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV076_RS13000 | 2705919..2707382 | + | 1464 | WP_045623244.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV076_RS13005 | 2707487..2707726 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV076_RS13010 | 2707761..2708405 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| HV076_RS13015 | 2708573..2709553 | + | 981 | WP_045623245.1 | VirK/YbjX family protein | - |
| HV076_RS13020 | 2709599..2709796 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2709672..2709873 | + | 202 | - | - | Antitoxin |
| - | 2709677..2709780 | - | 104 | - | - | Toxin |
| HV076_RS13025 | 2709922..2710260 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV076_RS13030 | 2710277..2711146 | - | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| HV076_RS13035 | 2711148..2711519 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV076_RS13040 | 2711657..2711887 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV076_RS13045 | 2711999..2712637 | + | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| HV076_RS13050 | 2712662..2713324 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2693020..2787034 | 94014 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165905 NZ_CP058149:c2709780-2709677 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT165905 NZ_CP058149:2709672-2709873 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
