Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2870572..2870773 | Replicon | chromosome |
| Accession | NZ_CP058146 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2870577..2870680 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2870572..2870773 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV088_RS13825 | 2866819..2868282 | + | 1464 | WP_045623244.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV088_RS13830 | 2868387..2868626 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV088_RS13835 | 2868661..2869305 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| HV088_RS13840 | 2869473..2870453 | + | 981 | WP_045623245.1 | VirK/YbjX family protein | - |
| HV088_RS13845 | 2870499..2870696 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2870572..2870773 | + | 202 | - | - | Antitoxin |
| - | 2870577..2870680 | - | 104 | - | - | Toxin |
| HV088_RS13850 | 2870822..2871160 | - | 339 | WP_022648464.1 | YebY family protein | - |
| HV088_RS13855 | 2871177..2872046 | - | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| HV088_RS13860 | 2872048..2872419 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV088_RS13865 | 2872557..2872787 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV088_RS13870 | 2872899..2873537 | + | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| HV088_RS13875 | 2873562..2874224 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165890 NZ_CP058146:c2870680-2870577 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT165890 NZ_CP058146:2870572-2870773 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
