Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 396540..397066 Replicon chromosome
Accession NZ_CP058146
Organism Enterobacter hormaechei strain RHBSTW-00133

Toxin (Protein)


Gene name relE Uniprot ID S1EXL1
Locus tag HV088_RS01885 Protein ID WP_000323025.1
Coordinates 396540..396827 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S1F6D3
Locus tag HV088_RS01890 Protein ID WP_000534858.1
Coordinates 396827..397066 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HV088_RS01875 392411..394183 + 1773 WP_045623524.1 DUF927 domain-containing protein -
HV088_RS01880 394243..395439 - 1197 WP_023568213.1 site-specific integrase -
HV088_RS01885 396540..396827 - 288 WP_000323025.1 type II toxin-antitoxin system mRNA interferase RelE Toxin
HV088_RS01890 396827..397066 - 240 WP_000534858.1 type II toxin-antitoxin system antitoxin RelB Antitoxin
HV088_RS01895 397329..398252 - 924 WP_000167917.1 cation diffusion facilitator family transporter -
HV088_RS01900 398452..399024 - 573 WP_001515348.1 cytochrome b/b6 domain-containing protein -
HV088_RS01905 399531..400691 + 1161 WP_000830285.1 IS30-like element ISCfr4 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 391452..405968 14516
- flank IS/Tn - - 399531..400691 1160


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-86)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-79)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11225.22 Da        Isoelectric Point: 10.1967

>T165887 WP_000323025.1 NZ_CP058146:c396827-396540 [Enterobacter hormaechei]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL

Download         Length: 288 bp

>T165887 NZ_CP073994:2695210-2695317 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGTGTAACCGGAAGTAA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9071.48 Da        Isoelectric Point: 4.5230

>AT165887 WP_000534858.1 NZ_CP058146:c397066-396827 [Enterobacter hormaechei]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL

Download         Length: 240 bp

>AT165887 NZ_CP073994:c2695157-2695096 [Escherichia coli]
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4V7K
PDB 4V7J
PDB 4FXI
PDB 4FXE
PDB 2KC8
PDB 4FXH
PDB 2KC9

Antitoxin

Source ID Structure
PDB 4FXE
PDB 2KC8
PDB 2K29
AlphaFold DB A0A4V1CTS8

References