Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1885657..1885804 | Replicon | chromosome |
| Accession | NZ_CP058131 | ||
| Organism | Klebsiella quasipneumoniae strain RHBSTW-00138 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1885698..1885800 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1885657..1885804 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV092_RS09110 | 1880792..1882852 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| HV092_RS09115 | 1882856..1883515 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| HV092_RS09120 | 1883594..1883824 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HV092_RS09125 | 1883937..1884311 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| HV092_RS09130 | 1884315..1885184 | + | 870 | WP_181352368.1 | copper homeostasis membrane protein CopD | - |
| HV092_RS09135 | 1885201..1885539 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1885657..1885804 | - | 148 | - | - | Antitoxin |
| - | 1885698..1885800 | + | 103 | - | - | Toxin |
| HV092_RS09140 | 1886197..1886340 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| HV092_RS09145 | 1886444..1887412 | - | 969 | WP_050583834.1 | VirK/YbjX family protein | - |
| HV092_RS09150 | 1887569..1888222 | + | 654 | WP_181352369.1 | protein-serine/threonine phosphatase | - |
| HV092_RS09155 | 1888219..1888410 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HV092_RS09160 | 1888508..1888747 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HV092_RS09165 | 1888864..1890297 | - | 1434 | WP_130945782.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T165868 NZ_CP058131:1885698-1885800 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT165868 NZ_CP058131:c1885804-1885657 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
